IL_8BHJ_088

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHJ_088 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1345

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8BHJ|1|0|C|2466
8BHJ|1|0|C|2467
8BHJ|1|0|A|2468
8BHJ|1|0|A|2469
8BHJ|1|0|G|2470
*
8BHJ|1|0|C|2480
8BHJ|1|0|G|2481
8BHJ|1|0|A|2482
8BHJ|1|0|C|2483
8BHJ|1|0|G|2484

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain J

50S ribosomal protein L16

Chain e

50S ribosomal protein L36