IL_8BHJ_108
3D structure
- PDB id
- 8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.81 Å
Loop
- Sequence
- CC*GAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHJ_108 not in the Motif Atlas
- Homologous match to IL_7RQB_113
- Geometric discrepancy: 0.2197
- The information below is about IL_7RQB_113
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_09061.8
- Basepair signature
- cWW-cWS-cSH-cWW
- Number of instances in this motif group
- 14
Unit IDs
8BHJ|1|1|C|30
8BHJ|1|1|C|31
*
8BHJ|1|1|G|51
8BHJ|1|1|A|52
8BHJ|1|1|A|53
8BHJ|1|1|G|54
Current chains
- Chain 1
- 5S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L5
- Chain L
- 50S ribosomal protein L18
Coloring options: