IL_8BHJ_176

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHJ_176 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.1306

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8BHJ|1|2|G|1416
8BHJ|1|2|G|1417
8BHJ|1|2|A|1418
8BHJ|1|2|G|1419
*
8BHJ|1|2|U|1481
8BHJ|1|2|G|1482
8BHJ|1|2|A|1483
8BHJ|1|2|C|1484

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA