IL_8BHJ_196

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GGC*GCAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHJ_196 not in the Motif Atlas

Geometric match to IL_7SZU_003

Geometric discrepancy: 0.2255

The information below is about IL_7SZU_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

8BHJ|1|0|G|2454
8BHJ|1|0|G|2455
8BHJ|1|0|C|2456
*
8BHJ|1|0|G|2495
8BHJ|1|0|C|2496
8BHJ|1|0|A|2497
8BHJ|1|0|C|2498

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain J

50S ribosomal protein L16