3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
UGAAGAAG*UGUAAAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BHJ_199 not in the Motif Atlas
Homologous match to IL_5J7L_020
Geometric discrepancy: 0.2164
The information below is about IL_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

8BHJ|1|2|U|409
8BHJ|1|2|G|410
8BHJ|1|2|A|411
8BHJ|1|2|A|412
8BHJ|1|2|G|413
8BHJ|1|2|A|414
8BHJ|1|2|A|415
8BHJ|1|2|G|416
*
8BHJ|1|2|U|427
8BHJ|1|2|G|428
8BHJ|1|2|U|429
8BHJ|1|2|A|430
8BHJ|1|2|A|431
8BHJ|1|2|A|432
8BHJ|1|2|G|433

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain h
30S ribosomal protein S4

Coloring options:


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