IL_8BHL_103

3D structure

PDB id

8BHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGC*GUAC

Length

7 nucleotides

Bulged bases

8BHL|1|0|A|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHL_103 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2076

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

8BHL|1|0|G|2838
8BHL|1|0|G|2839
8BHL|1|0|C|2840
*
8BHL|1|0|G|2877
8BHL|1|0|U|2878
8BHL|1|0|A|2879
8BHL|1|0|C|2880

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19