IL_8BHL_132

3D structure

PDB id

8BHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8BHL|1|2|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHL_132 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1243

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8BHL|1|2|G|446
8BHL|1|2|G|447
8BHL|1|2|A|448
8BHL|1|2|G|449
8BHL|1|2|G|450
*
8BHL|1|2|C|483
8BHL|1|2|G|484
8BHL|1|2|U|485
8BHL|1|2|U|486
8BHL|1|2|A|487
8BHL|1|2|C|488

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain t

30S ribosomal protein S16