IL_8BHN_060

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8BHN|1|0|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHN_060 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1238

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8BHN|1|0|C|1686
8BHN|1|0|G|1687
8BHN|1|0|U|1688
8BHN|1|0|A|1689
8BHN|1|0|A|1690
8BHN|1|0|C|1691
*
8BHN|1|0|G|1696
8BHN|1|0|G|1697
8BHN|1|0|A|1698
8BHN|1|0|G|1699
8BHN|1|0|A|1700
8BHN|1|0|A|1701
8BHN|1|0|G|1702

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2