IL_8BHN_177

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

AGC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGC,GCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHN_177 not in the Motif Atlas

Geometric match to IL_5TBW_027

Geometric discrepancy: 0.1887

The information below is about IL_5TBW_027

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8BHN|1|4|A|10
8BHN|1|4|G|11
8BHN|1|4|C|12
*
8BHN|1|4|G|22
8BHN|1|4|C|23
8BHN|1|4|U|24

Current chains

Chain 4

Deacylated P-site tRNA(fMet)

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA