3D structure

PDB id
8BHP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.37 Å

Loop

Sequence
GCAAG*CAACC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BHP_030 not in the Motif Atlas
Homologous match to IL_5J7L_274
Geometric discrepancy: 0.1907
The information below is about IL_5J7L_274
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

8BHP|1|0|G|875
8BHP|1|0|C|876
8BHP|1|0|A|877
8BHP|1|0|A|878
8BHP|1|0|G|879
*
8BHP|1|0|C|898
8BHP|1|0|A|899
8BHP|1|0|A|900
8BHP|1|0|C|901
8BHP|1|0|C|902

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain J
50S ribosomal protein L16

Coloring options:


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