IL_8BHP_072

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

8BHP|1|0|A|1938, 8BHP|1|0|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHP_072 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1703

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

8BHP|1|0|C|1934
8BHP|1|0|G|1935
8BHP|1|0|A|1936
8BHP|1|0|A|1937
8BHP|1|0|A|1938
8BHP|1|0|U|1939
8BHP|1|0|U|1940
8BHP|1|0|C|1941
8BHP|1|0|C|1942
8BHP|1|0|U|1943
8BHP|1|0|U|1944
8BHP|1|0|G|1945
*
8BHP|1|0|C|1961
8BHP|1|0|C|1962
8BHP|1|0|U|1963
8BHP|1|0|G|1964

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2