IL_8BHP_081

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHP_081 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.1024

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

8BHP|1|0|C|2350
8BHP|1|0|G|2351
8BHP|1|0|A|2352
8BHP|1|0|G|2353
*
8BHP|1|0|C|2364
8BHP|1|0|G|2365
8BHP|1|0|A|2366
8BHP|1|0|G|2367

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain T

50S ribosomal protein L27

Chain d

50S ribosomal protein L35