IL_8BHP_162

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHP_162 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1344

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8BHP|1|2|C|1158
8BHP|1|2|U|1159
8BHP|1|2|G|1160
8BHP|1|2|C|1161
*
8BHP|1|2|G|1175
8BHP|1|2|A|1176
8BHP|1|2|G|1177
8BHP|1|2|G|1178
8BHP|1|2|A|1179
8BHP|1|2|A|1180
8BHP|1|2|G|1181

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain m

30S ribosomal protein S9