IL_8BIL_038

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8BIL|1|0|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIL_038 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.1165

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8BIL|1|0|U|1018
8BIL|1|0|U|1019
8BIL|1|0|A|1020
8BIL|1|0|A|1021
8BIL|1|0|G|1022
8BIL|1|0|U|1023
8BIL|1|0|G|1024
*
8BIL|1|0|C|1140
8BIL|1|0|U|1141
8BIL|1|0|A|1142
8BIL|1|0|A|1143
8BIL|1|0|A|1144

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain e

50S ribosomal protein L36