IL_8BIL_044

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIL_044 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.1025

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8BIL|1|0|A|1262
8BIL|1|0|U|1263
8BIL|1|0|A|1264
8BIL|1|0|A|1265
8BIL|1|0|G|1266
8BIL|1|0|U|1267
8BIL|1|0|A|1268
8BIL|1|0|A|1269
*
8BIL|1|0|U|2011
8BIL|1|0|G|2012
8BIL|1|0|A|2013
8BIL|1|0|A|2014
8BIL|1|0|A|2015
8BIL|1|0|U|2016
8BIL|1|0|U|2017

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain a

50S ribosomal protein L32