3D structure

PDB id
8BIL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.04 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
8BIL|1|0|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BIL_063 not in the Motif Atlas
Homologous match to IL_5J7L_308
Geometric discrepancy: 0.114
The information below is about IL_5J7L_308
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

8BIL|1|0|C|1686
8BIL|1|0|G|1687
8BIL|1|0|U|1688
8BIL|1|0|A|1689
8BIL|1|0|A|1690
8BIL|1|0|C|1691
*
8BIL|1|0|G|1696
8BIL|1|0|G|1697
8BIL|1|0|A|1698
8BIL|1|0|G|1699
8BIL|1|0|A|1700
8BIL|1|0|A|1701
8BIL|1|0|G|1702

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain A
50S ribosomal protein L2

Coloring options:


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