IL_8BIL_064

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8BIL|1|0|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIL_064 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1464

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8BIL|1|0|U|1712
8BIL|1|0|A|1713
8BIL|1|0|U|1714
8BIL|1|0|G|1715
8BIL|1|0|U|1716
8BIL|1|0|A|1717
8BIL|1|0|G|1718
*
8BIL|1|0|U|1742
8BIL|1|0|G|1743
8BIL|1|0|A|1744
8BIL|1|0|A|1745
8BIL|1|0|A|1746

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains