IL_8BIL_147

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GCAAAC*GGUAGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIL_147 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.351

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8BIL|1|2|G|778
8BIL|1|2|C|779
8BIL|1|2|A|780
8BIL|1|2|A|781
8BIL|1|2|A|782
8BIL|1|2|C|783
*
8BIL|1|2|G|799
8BIL|1|2|G|800
8BIL|1|2|U|801
8BIL|1|2|A|802
8BIL|1|2|G|803
8BIL|1|2|U|804

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain o

30S ribosomal protein S11

Chain y

30S ribosomal protein S21