IL_8BIM_006

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_006 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.1024

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8BIM|1|0|G|188
8BIM|1|0|G|189
8BIM|1|0|A|190
8BIM|1|0|A|191
8BIM|1|0|C|192
8BIM|1|0|U|193
8BIM|1|0|G|194
*
8BIM|1|0|C|201
8BIM|1|0|U|202
8BIM|1|0|A|203
8BIM|1|0|A|204
8BIM|1|0|G|205
8BIM|1|0|U|206
8BIM|1|0|A|207
8BIM|1|0|C|208

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain U

50S ribosomal protein L28