IL_8BIM_009

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2887

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8BIM|1|0|C|274
8BIM|1|0|C|275
8BIM|1|0|U|276
8BIM|1|0|G|277
8BIM|1|0|A|278
8BIM|1|0|A|279
8BIM|1|0|U|280
8BIM|1|0|C|281
*
8BIM|1|0|G|359
8BIM|1|0|U|360
8BIM|1|0|G|361
8BIM|1|0|A|362
8BIM|1|0|G|363

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains