IL_8BIM_037

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8BIM|1|0|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_037 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.1158

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8BIM|1|0|U|1018
8BIM|1|0|U|1019
8BIM|1|0|A|1020
8BIM|1|0|A|1021
8BIM|1|0|G|1022
8BIM|1|0|U|1023
8BIM|1|0|G|1024
*
8BIM|1|0|C|1140
8BIM|1|0|U|1141
8BIM|1|0|A|1142
8BIM|1|0|A|1143
8BIM|1|0|A|1144

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain e

50S ribosomal protein L36