IL_8BIM_043

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_043 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0994

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8BIM|1|0|A|1262
8BIM|1|0|U|1263
8BIM|1|0|A|1264
8BIM|1|0|A|1265
8BIM|1|0|G|1266
8BIM|1|0|U|1267
8BIM|1|0|A|1268
8BIM|1|0|A|1269
*
8BIM|1|0|U|2011
8BIM|1|0|G|2012
8BIM|1|0|A|2013
8BIM|1|0|A|2014
8BIM|1|0|A|2015
8BIM|1|0|U|2016
8BIM|1|0|U|2017

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain a

50S ribosomal protein L32