IL_8BIM_062

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8BIM|1|0|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_062 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.112

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8BIM|1|0|C|1686
8BIM|1|0|G|1687
8BIM|1|0|U|1688
8BIM|1|0|A|1689
8BIM|1|0|A|1690
8BIM|1|0|C|1691
*
8BIM|1|0|G|1696
8BIM|1|0|G|1697
8BIM|1|0|A|1698
8BIM|1|0|G|1699
8BIM|1|0|A|1700
8BIM|1|0|A|1701
8BIM|1|0|G|1702

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2