IL_8BIM_071

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_071 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1501

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8BIM|1|0|U|1864
8BIM|1|0|U|1865
8BIM|1|0|A|1866
8BIM|1|0|G|1867
*
8BIM|1|0|C|1874
8BIM|1|0|G|1875
8BIM|1|0|A|1876
8BIM|1|0|A|1877
8BIM|1|0|G|1878

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains