IL_8BIM_073

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

8BIM|1|0|A|1938, 8BIM|1|0|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_073 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1634

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

8BIM|1|0|C|1934
8BIM|1|0|G|1935
8BIM|1|0|A|1936
8BIM|1|0|A|1937
8BIM|1|0|A|1938
8BIM|1|0|U|1939
8BIM|1|0|U|1940
8BIM|1|0|C|1941
8BIM|1|0|C|1942
8BIM|1|0|U|1943
8BIM|1|0|U|1944
8BIM|1|0|G|1945
*
8BIM|1|0|C|1961
8BIM|1|0|C|1962
8BIM|1|0|U|1963
8BIM|1|0|G|1964

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2