IL_8BIM_083

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GUUC*GGC

Length

7 nucleotides

Bulged bases

8BIM|1|0|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_083 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2305

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8BIM|1|0|G|2400
8BIM|1|0|U|2401
8BIM|1|0|U|2402
8BIM|1|0|C|2403
*
8BIM|1|0|G|2414
8BIM|1|0|G|2415
8BIM|1|0|C|2416

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain b

50S ribosomal protein L33

Chain d

50S ribosomal protein L35