IL_8BIM_109
3D structure
- PDB id
- 8BIM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BIM_109 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1076
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8BIM|1|1|C|71
8BIM|1|1|G|72
8BIM|1|1|A|73
8BIM|1|1|U|74
8BIM|1|1|G|75
8BIM|1|1|G|76
8BIM|1|1|U|77
8BIM|1|1|A|78
8BIM|1|1|G|79
*
8BIM|1|1|C|97
8BIM|1|1|G|98
8BIM|1|1|A|99
8BIM|1|1|G|100
8BIM|1|1|A|101
8BIM|1|1|G|102
8BIM|1|1|U|103
8BIM|1|1|A|104
8BIM|1|1|G|105
Current chains
- Chain 1
- 5S rRNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L25
Coloring options: