IL_8BIM_129

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_129 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1052

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8BIM|1|2|U|409
8BIM|1|2|G|410
8BIM|1|2|A|411
8BIM|1|2|A|412
8BIM|1|2|G|413
8BIM|1|2|A|414
8BIM|1|2|A|415
8BIM|1|2|G|416
*
8BIM|1|2|U|427
8BIM|1|2|G|428
8BIM|1|2|U|429
8BIM|1|2|A|430
8BIM|1|2|A|431
8BIM|1|2|A|432
8BIM|1|2|G|433

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain h

30S ribosomal protein S4