IL_8BIM_131
3D structure
- PDB id
- 8BIM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- GGAGG*CGUUAC
- Length
- 11 nucleotides
- Bulged bases
- 8BIM|1|2|U|485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BIM_131 not in the Motif Atlas
- Geometric match to IL_5J7L_022
- Geometric discrepancy: 0.103
- The information below is about IL_5J7L_022
- Detailed Annotation
- tSH-tHW-tWW
- Broad Annotation
- No text annotation
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8BIM|1|2|G|446
8BIM|1|2|G|447
8BIM|1|2|A|448
8BIM|1|2|G|449
8BIM|1|2|G|450
*
8BIM|1|2|C|483
8BIM|1|2|G|484
8BIM|1|2|U|485
8BIM|1|2|U|486
8BIM|1|2|A|487
8BIM|1|2|C|488
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain h
- 30S ribosomal protein S4
- Chain t
- 30S ribosomal protein S16
Coloring options: