IL_8BIM_177

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GGGG*CUUAC

Length

9 nucleotides

Bulged bases

8BIM|1|0|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_177 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.3263

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8BIM|1|0|G|880
8BIM|1|0|G|881
8BIM|1|0|G|882
8BIM|1|0|G|883
*
8BIM|1|0|C|893
8BIM|1|0|U|894
8BIM|1|0|U|895
8BIM|1|0|A|896
8BIM|1|0|C|897

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains