IL_8BIM_179

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_179 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0905

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8BIM|1|0|G|1666
8BIM|1|0|G|1667
8BIM|1|0|A|1668
8BIM|1|0|A|1669
8BIM|1|0|C|1670
8BIM|1|0|U|1671
8BIM|1|0|A|1672
8BIM|1|0|G|1673
8BIM|1|0|G|1674
*
8BIM|1|0|C|1990
8BIM|1|0|U|1991
8BIM|1|0|G|1992
8BIM|1|0|U|1993
8BIM|1|0|C|1994

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14