IL_8BIM_182

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GGACC*GGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_182 not in the Motif Atlas

Homologous match to IL_5J7L_013

Geometric discrepancy: 0.4441

The information below is about IL_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66997.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8BIM|1|2|G|203
8BIM|1|2|G|204
8BIM|1|2|A|205
8BIM|1|2|C|206
8BIM|1|2|C|207
*
8BIM|1|2|G|212
8BIM|1|2|G|213
8BIM|1|2|C|214

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains