3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AUC*GU
Length
5 nucleotides
Bulged bases
8BIP|1|1|U|14
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BIP_003 not in the Motif Atlas
Homologous match to IL_8C3A_003
Geometric discrepancy: 0.1306
The information below is about IL_8C3A_003
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

8BIP|1|1|A|13
8BIP|1|1|U|14
8BIP|1|1|C|15
*
8BIP|1|C3|G|144
8BIP|1|C3|U|145

Current chains

Chain 1
25S rRNA
Chain C3
5.8S rRNA

Nearby chains

Chain LG
60S ribosomal protein L8-A
Chain LN
60S ribosomal protein L15-A
Chain LX
60S ribosomal protein L25

Coloring options:


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