3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AU*AGUUGU
Length
8 nucleotides
Bulged bases
8BIP|1|1|U|147
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BIP_007 not in the Motif Atlas
Homologous match to IL_8C3A_007
Geometric discrepancy: 0.0823
The information below is about IL_8C3A_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_19724.3
Basepair signature
cWW-cWW-L-cWW-L
Number of instances in this motif group
4

Unit IDs

8BIP|1|1|A|123
8BIP|1|1|U|124
*
8BIP|1|1|A|144
8BIP|1|1|G|145
8BIP|1|1|U|146
8BIP|1|1|U|147
8BIP|1|1|G|148
8BIP|1|1|U|149

Current chains

Chain 1
25S rRNA

Nearby chains

Chain C3
5.8S ribosomal RNA; 5.8S rRNA
Chain LG
60S ribosomal protein L8-A
Chain LN
60S ribosomal protein L15-A

Coloring options:


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