IL_8BIP_011

3D structure

PDB id

8BIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

8BIP|1|1|U|240

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIP_011 not in the Motif Atlas

Geometric match to IL_4KQY_004

Geometric discrepancy: 0.3911

The information below is about IL_4KQY_004

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

8BIP|1|1|U|177
8BIP|1|1|U|178
*
8BIP|1|1|A|238
8BIP|1|1|G|239
8BIP|1|1|U|240
8BIP|1|1|G|241

Current chains

Chain 1

25S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13-A

Chain Lh

60S ribosomal protein L35-A

Chain Lj

60S ribosomal protein L37-A