3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUU*AUA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BIP_034 not in the Motif Atlas
Homologous match to IL_8C3A_037
Geometric discrepancy: 0.0677
The information below is about IL_8C3A_037
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

8BIP|1|1|U|954
8BIP|1|1|U|955
8BIP|1|1|U|956
*
8BIP|1|1|A|965
8BIP|1|1|U|966
8BIP|1|1|A|967

Current chains

Chain 1
25S rRNA

Nearby chains

Chain LL
60S ribosomal protein L13-A
Chain LQ
60S ribosomal protein L18-A
Chain LT
60S ribosomal protein L21-A
Chain La
60S ribosomal protein L28
Chain Lb
60S ribosomal protein L29

Coloring options:


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