3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAGUG*CUC
Length
8 nucleotides
Bulged bases
8BIP|1|1|A|1263
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BIP_055 not in the Motif Atlas
Geometric match to IL_5D8H_003
Geometric discrepancy: 0.1822
The information below is about IL_5D8H_003
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_51387.2
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
20

Unit IDs

8BIP|1|1|G|1262
8BIP|1|1|A|1263
8BIP|1|1|G|1264
8BIP|1|1|U|1265
8BIP|1|1|G|1266
*
8BIP|1|1|C|1275
8BIP|1|1|U|1276
8BIP|1|1|C|1277

Current chains

Chain 1
25S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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