3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAUG*CGC
Length
8 nucleotides
Bulged bases
8BIP|1|1|U|2209
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BIP_091 not in the Motif Atlas
Homologous match to IL_8C3A_092
Geometric discrepancy: 0.4299
The information below is about IL_8C3A_092
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_58579.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
6

Unit IDs

8BIP|1|1|G|2206
8BIP|1|1|A|2207
8BIP|1|1|A|2208
8BIP|1|1|U|2209
8BIP|1|1|G|2210
*
8BIP|1|1|C|2235
8BIP|1|1|G|2236
8BIP|1|1|C|2237

Current chains

Chain 1
25S rRNA

Nearby chains

Chain LA
60S ribosomal protein L2-A

Coloring options:


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