3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CC*GUG
Length
5 nucleotides
Bulged bases
8BIP|1|1|U|3198
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BIP_129 not in the Motif Atlas
Homologous match to IL_5TBW_125
Geometric discrepancy: 0.1891
The information below is about IL_5TBW_125
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

8BIP|1|1|C|3193
8BIP|1|1|C|3194
*
8BIP|1|1|G|3197
8BIP|1|1|U|3198
8BIP|1|1|G|3199

Current chains

Chain 1
25S rRNA

Nearby chains

Chain LH
60S ribosomal protein L9-A
Chain LM
60S ribosomal protein L14-A
Chain LO
60S ribosomal protein L16-A

Coloring options:


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