3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAAGUCGG*CUGUC
Length
14 nucleotides
Bulged bases
8BIP|1|1|G|2335
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BIP_156 not in the Motif Atlas
Homologous match to IL_8C3A_484
Geometric discrepancy: 0.0626
The information below is about IL_8C3A_484
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.2
Basepair signature
cWW-cWW-L-cWW-L-R-L-R-L-L
Number of instances in this motif group
3

Unit IDs

8BIP|1|1|G|1898
8BIP|1|1|G|1899
8BIP|1|1|A|1900
8BIP|1|1|A|1901
8BIP|1|1|G|1902
8BIP|1|1|U|1903
8BIP|1|1|C|1904
8BIP|1|1|G|1905
8BIP|1|1|G|1906
*
8BIP|1|1|C|2333
8BIP|1|1|U|2334
8BIP|1|1|G|2335
8BIP|1|1|U|2336
8BIP|1|1|C|2337

Current chains

Chain 1
25S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LV
60S ribosomal protein L23-A

Coloring options:


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