IL_8BJQ_007

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

8BJQ|1|1|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BJQ_007 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.0865

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8BJQ|1|1|A|123
8BJQ|1|1|U|124
*
8BJQ|1|1|A|144
8BJQ|1|1|G|145
8BJQ|1|1|U|146
8BJQ|1|1|U|147
8BJQ|1|1|G|148
8BJQ|1|1|U|149

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

60S ribosomal protein L8-A

Chain LN

60S ribosomal protein L15-A