IL_8BJQ_052
3D structure
- PDB id
- 8BJQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 8BJQ|1|1|U|1208
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BJQ_052 not in the Motif Atlas
- Homologous match to IL_8C3A_056
- Geometric discrepancy: 0.2204
- The information below is about IL_8C3A_056
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
8BJQ|1|1|G|1207
8BJQ|1|1|U|1208
8BJQ|1|1|G|1209
*
8BJQ|1|1|C|1296
8BJQ|1|1|C|1297
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain LH
- 60S ribosomal protein L9-A
- Chain LI
- 60S ribosomal protein L10
- Chain LS
- 60S ribosomal protein L20-A
- Chain Lm
- 60S ribosomal protein L40-A
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