IL_8BJQ_110

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BJQ_110 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1254

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8BJQ|1|1|U|2835
8BJQ|1|1|C|2836
8BJQ|1|1|A|2837
8BJQ|1|1|A|2838
8BJQ|1|1|G|2839
*
8BJQ|1|1|C|2849
8BJQ|1|1|G|2850
8BJQ|1|1|A|2851
8BJQ|1|1|C|2852
8BJQ|1|1|A|2853

Current chains

Chain 1

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain Lm

60S ribosomal protein L40-A