IL_8BN3_003

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8BN3|1|1|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_003 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.0673

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8BN3|1|1|A|13
8BN3|1|1|U|14
8BN3|1|1|C|15
*
8BN3|1|4|G|144
8BN3|1|4|U|145

Current chains

Chain 1

25S ribosomal RNA

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain L8

60S ribosomal protein L8-A

Chain M5

Ribosomal protein L15

Chain N5

60S ribosomal protein L25