IL_8BN3_007

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

8BN3|1|1|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_007 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.0739

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8BN3|1|1|A|123
8BN3|1|1|U|124
*
8BN3|1|1|A|144
8BN3|1|1|G|145
8BN3|1|1|U|146
8BN3|1|1|U|147
8BN3|1|1|G|148
8BN3|1|1|U|149

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain L8

60S ribosomal protein L8-A

Chain M5

Ribosomal protein L15