IL_8BN3_010

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

8BN3|1|1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_010 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.3407

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

8BN3|1|1|U|169
8BN3|1|1|G|170
*
8BN3|1|1|U|248
8BN3|1|1|U|249
8BN3|1|1|U|250
8BN3|1|1|G|251
8BN3|1|1|U|252
8BN3|1|1|A|253

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M3

60S ribosomal protein L13-A

Chain O5

60S ribosomal protein L35-A