IL_8BN3_015
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BN3_015 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0617
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BN3|1|1|G|404
8BN3|1|1|U|405
8BN3|1|1|G|406
8BN3|1|1|A|407
8BN3|1|1|A|408
8BN3|1|1|A|409
8BN3|1|1|U|410
*
8BN3|1|4|A|13
8BN3|1|4|C|14
8BN3|1|4|G|15
8BN3|1|4|G|16
8BN3|1|4|A|17
8BN3|1|4|U|18
8BN3|1|4|C|19
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain L4
- RPL4A isoform 1
- Chain M7
- 60S ribosomal protein L17-A
- Chain O2
- RPL32 isoform 1
Coloring options: