3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GGAUAAAUC*GGAAUAC
Length
16 nucleotides
Bulged bases
8BN3|1|1|A|519, 8BN3|1|1|U|520
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BN3_019 not in the Motif Atlas
Homologous match to IL_5TBW_019
Geometric discrepancy: 0.0649
The information below is about IL_5TBW_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74024.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

8BN3|1|1|G|517
8BN3|1|1|G|518
8BN3|1|1|A|519
8BN3|1|1|U|520
8BN3|1|1|A|521
8BN3|1|1|A|522
8BN3|1|1|A|523
8BN3|1|1|U|524
8BN3|1|1|C|525
*
8BN3|1|1|G|567
8BN3|1|1|G|568
8BN3|1|1|A|569
8BN3|1|1|A|570
8BN3|1|1|U|571
8BN3|1|1|A|572
8BN3|1|1|C|573

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L4
RPL4A isoform 1
Chain L7
60S ribosomal protein L7-A
Chain M4
60S ribosomal protein L14-A
Chain N0
60S ribosomal protein L20-A

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