IL_8BN3_026

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_026 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1158

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BN3|1|1|C|758
8BN3|1|1|U|759
8BN3|1|1|G|760
8BN3|1|1|A|761
8BN3|1|1|U|762
8BN3|1|1|G|763
*
8BN3|1|1|C|768
8BN3|1|1|G|769
8BN3|1|1|G|770
8BN3|1|1|A|771
8BN3|1|1|U|772
8BN3|1|1|G|773

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M3

60S ribosomal protein L13-A

Chain N8

60S ribosomal protein L28

Chain Q2

60S ribosomal protein L42-A