IL_8BN3_027

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_027 not in the Motif Atlas

Homologous match to IL_8C3A_029

Geometric discrepancy: 0.0782

The information below is about IL_8C3A_029

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8BN3|1|1|C|803
8BN3|1|1|C|804
8BN3|1|1|G|805
*
8BN3|1|1|C|938
8BN3|1|1|U|939
8BN3|1|1|G|940

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L4

RPL4A isoform 1

Chain N8

60S ribosomal protein L28